If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ), 'gf_id' => 'HOM05D000606', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000606' ), 'data_identifier' => 'HOM05D000606', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000606', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '935', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08350' => 'bna', 'A01p33660' => 'bna', 'A02p18750' => 'bna', 'A03p13300' => 'bna', 'A03p42100' => 'bna', 'A03p56470' => 'bna', 'A04p13460' => 'bna', 'A05p19460' => 'bna', 'A05p41820' => 'bna', 'A07p29780' => 'bna', 'A08p02580' => 'bna', 'A09p33860' => 'bna', 'A10p13940' => 'bna', 'Aa31LG10G3120' => 'aar', 'Aa31LG2G20730' => 'aar', 'Aa31LG3G12440' => 'aar', 'Aa31LG3G430' => 'aar', 'Aa31LG4G3730' => 'aar', 'Aa31LG8G7920' => 'aar', 'Aa31LG9G1180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1313' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1957' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4325' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.938' => 'aag', 'Actinidia00634' => 'ach', 'Actinidia09057' => 'ach', 'Actinidia17512' => 'ach', 'Actinidia21856' => 'ach', 'Actinidia25233' => 'ach', 'Actinidia25986' => 'ach', 'Actinidia25994' => 'ach', 'Actinidia31139' => 'ach', 'Actinidia33815' => 'ach', 'Actinidia35768' => 'ach', 'Actinidia38875' => 'ach', 'Actinidia39699' => 'ach', 'Actinidia39775' => 'ach', 'Ah.04g166070' => 'amhyb', 'Ah.09g232350' => 'amhyb', 'Ah.13g066140' => 'amhyb', 'Ah.14g085020' => 'amhyb', 'AL1G30770' => 'aly', 'AL1G46460' => 'aly', 'AL1G59570' => 'aly', 'AL2G33260' => 'aly', 'AL3G17090' => 'aly', 'AL3G35250' => 'aly', 'AL7G22440' => 'aly', 'AL7G26910' => 'aly', 'AL7G49390' => 'aly', 'AL8G32400' => 'aly', 'Aqoxy2G00474' => 'aox', 'Aqoxy2G02423' => 'aox', 'Aqoxy2G02433' => 'aox', 'Aqoxy3G02218' => 'aox', 'Aqoxy3G04066' => 'aox', 'Aqoxy5G03809' => 'aox', 'Aqoxy7G03144' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E5VBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84JEJ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8S1XGC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ITJ1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNS53F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNR1MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LL1IKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R09AEV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI4L2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEC1JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U3N7IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV332B' => 'arhy', 'AT1G18350' => 'ath', 'AT1G32320' => 'ath', 'AT1G51660' => 'ath', 'AT1G73500' => 'ath', 'AT3G06230' => 'ath', 'AT3G21220' => 'ath', 'AT4G26070' => 'ath', 'AT4G29810' => 'ath', 'AT5G40440' => 'ath', 'AT5G56580' => 'ath', 'ATR0051G020' => 'atr', 'ATR0118G033' => 'atr', 'ATR0568G205' => 'atr', 'ATR0568G224' => 'atr', 'ATR0705G150' => 'atr', 'ATR0800G131' => 'atr', 'ATR1154G050' => 'atr', 'Atru.chr1.2767' => 'acertr', 'Atru.chr6.2287' => 'acertr', 'Atru.chr7.1482' => 'acertr', 'Atru.chr7.1645' => 'acertr', 'Atru.chr9.1598' => 'acertr', 'AUR62002253' => 'cqu', 'AUR62010876' => 'cqu', 'AUR62015864' => 'cqu', 'AUR62020359' => 'cqu', 'AUR62021389' => 'cqu', 'AUR62025111' => 'cqu', 'AUR62026127' => 'cqu', 'AUR62029019' => 'cqu', 'AUR62033043' => 'cqu', 'AUR62042006' => 'cqu', 'BcaB01g04409' => 'bca', 'BcaB02g11268' => 'bca', 'BcaB02g11269' => 'bca', 'BcaB03g15715' => 'bca', 'BcaB03g15956' => 'bca', 'BcaB04g17182' => 'bca', 'BcaB04g17184' => 'bca', 'BcaB04g19152' => 'bca', 'BcaB04g19153' => 'bca', 'BcaB04g20602' => 'bca', 'BcaB06g27502' => 'bca', 'BcaC01g01285' => 'bca', 'BcaC01g03517' => 'bca', 'BcaC01g06433' => 'bca', 'BcaC04g20071' => 'bca', 'BcaC04g20968' => 'bca', 'BcaC05g27269' => 'bca', 'BcaC05g29793' => 'bca', 'BcaC05g30049' => 'bca', 'BcaC06g32770' => 'bca', 'BcaC08g43928' => 'bca', 'BcaC08g45640' => 'bca', 'BcaC09g49059' => 'bca', 'BcaC09g51759' => 'bca', 'BcaNung05294' => 'bca', 'BolC1t00927H' => 'bol', 'BolC2t09157H' => 'bol', 'BolC3t13994H' => 'bol', 'BolC3t17439H' => 'bol', 'BolC3t21345H' => 'bol', 'BolC4t26322H' => 'bol', 'BolC5t31900H' => 'bol', 'BolC5t34764H' => 'bol', 'BolC6t36476H' => 'bol', 'BolC6t38514H' => 'bol', 'BolC7t45958H' => 'bol', 'BolC9t56576H' => 'bol', 'BolC9t57669H' => 'bol', 'BraA01t00783Z' => 'bra', 'BraA01t03478Z' => 'bra', 'BraA02t06917Z' => 'bra', 'BraA03t10642Z' => 'bra', 'BraA03t13364Z' => 'bra', 'BraA03t13365Z' => 'bra', 'BraA03t14718Z' => 'bra', 'BraA04t17004Z' => 'bra', 'BraA05t20850Z' => 'bra', 'BraA05t22901Z' => 'bra', 'BraA07t30616Z' => 'bra', 'BraA08t32298Z' => 'bra', 'BraA09t38934Z' => 'bra', 'BraA10t43486Z' => 'bra', 'C01p09390' => 'bna', 'C01p43030' => 'bna', 'C02p31130' => 'bna', 'C03p15570' => 'bna', 'C03p51540' => 'bna', 'C03p90230' => 'bna', 'C04p47230' => 'bna', 'C05p31740' => 'bna', 'C05p61070' => 'bna', 'C06p13200' => 'bna', 'C06p33990' => 'bna', 'C07p54690' => 'bna', 'C09p37450' => 'bna', 'C09p48190' => 'bna', 'CAN.G1583.10' => 'can', 'CAN.G1889.2' => 'can', 'CAN.G2430.1' => 'can', 'CAN.G637.42' => 'can', 'CAN.G790.43' => 'can', 'CAN.G861.18' => 'can', 'CANSAT01G1624' => 'cansat', 'CANSAT56G1260' => 'cansat', 'CANSAT56G2185' => 'cansat', 'CANSAT64G0281' => 'cansat', 'CANSAT78G1121' => 'cansat', 'CANSAT78G1253' => 'cansat', 'CANSAT78G1498' => 'cansat', 'CARHR018940' => 'chi', 'CARHR031670' => 'chi', 'CARHR041820' => 'chi', 'CARHR066520' => 'chi', 'CARHR080740' => 'chi', 'CARHR097120' => 'chi', 'CARHR233580' => 'chi', 'CARHR237710' => 'chi', 'CARHR261580' => 'chi', 'CARHR270270' => 'chi', 'Carub.0001s1798' => 'cru', 'Carub.0001s3065' => 'cru', 'Carub.0001s4051' => 'cru', 'Carub.0002s2023' => 'cru', 'Carub.0003s0566' => 'cru', 'Carub.0003s2119' => 'cru', 'Carub.0004s1482' => 'cru', 'Carub.0006s2589' => 'cru', 'Carub.0007s1488' => 'cru', 'Carub.0007s3515' => 'cru', 'Carub.0008s1706' => 'cru', 'Ca_03169_v3' => 'car', 'Ca_04166_v3' => 'car', 'Ca_08151_v3' => 'car', 'Ca_13139_v3' => 'car', 'Ca_20959_v3' => 'car', 'Ca_20960_v3' => 'car', 'Ca_21301_v3' => 'car', 'Ca_25587_v3' => 'car', 'CBR_g21977' => 'cbr', 'CBR_g34886' => 'cbr', 'CBR_g38176' => 'cbr', 'Cc00_g04720' => 'ccan', 'Cc00_g14760' => 'ccan', 'Cc04_g00500' => 'ccan', 'Cc04_g09350' => 'ccan', 'Cc06_g10630' => 'ccan', 'Cc06_g11750' => 'ccan', 'Cc06_g13650' => 'ccan', 'Cc08_g03210' => 'ccan', 'CDE02G1015' => 'cde', 'CDE04G1711' => 'cde', 'CDE05G1774' => 'cde', 'CDE05G2482' => 'cde', 'CDE05G2682' => 'cde', 'CDE06G0286' => 'cde', 'CDE06G1239' => 'cde', 'CDE06G2169' => 'cde', 'CDE07G0322' => 'cde', 'CDE09G0793' => 'cde', 'CDE11G0672' => 'cde', 'Cfa003048' => 'cfa', 'Cfa012486' => 'cfa', 'Cfa020636' => 'cfa', 'Cfa022609' => 'cfa', 'Cfa023282' => 'cfa', 'Cfa026026' => 'cfa', 'Ciclev10008579m.g' => 'ccl', 'Ciclev10008771m.g' => 'ccl', 'Ciclev10014932m.g' => 'ccl', 'Ciclev10017740m.g' => 'ccl', 'Ciclev10021170m.g' => 'ccl', 'Ciclev10023604m.g' => 'ccl', 'Ciclev10024591m.g' => 'ccl', 'Ciclev10025845m.g' => 'ccl', 'CiPaw.01G209900' => 'cil', 'CiPaw.02G129900' => 'cil', 'CiPaw.03G043100' => 'cil', 'CiPaw.03G211300' => 'cil', 'CiPaw.03G222700' => 'cil', 'CiPaw.04G147300' => 'cil', 'CiPaw.04G155200' => 'cil', 'CiPaw.11G096700' => 'cil', 'CiPaw.15G147400' => 'cil', 'CiPaw.16G097400' => 'cil', 'ClCG03G015350' => 'cla', 'ClCG04G010440' => 'cla', 'ClCG07G014190' => 'cla', 'ClCG10G013920' => 'cla', 'ClCG11G001650' => 'cla', 'ClCG11G002030' => 'cla', 'COL.COLO4_05243' => 'col', 'COL.COLO4_06203' => 'col', 'COL.COLO4_16969' => 'col', 'COL.COLO4_17036' => 'col', 'COL.COLO4_20610' => 'col', 'COL.COLO4_22861' => 'col', 'COL.COLO4_29102' => 'col', 'COL.COLO4_34723' => 'col', 'COL.COLO4_37162' => 'col', 'Cpa.g.c46236' => 'cpa', 'Cpa.g.sc108.63' => 'cpa', 'Cpa.g.sc1155.2' => 'cpa', 'Cpa.g.sc1155.3' => 'cpa', 'Cpa.g.sc3.358' => 'cpa', 'Cpa.g.sc3344.1' => 'cpa', 'Cpa.g.sc371.4' => 'cpa', 'Cpa.g.sc51.18' => 'cpa', 'Cpa.g.sc756.1' => 'cpa', 'Cpa.g.sc78.31' => 'cpa', 'Cpa.g.sc90.17' => 'cpa', 'Cre05.g246200' => 'cre', 'Cre06.g249150' => 'cre', 'Cre13.g563733' => 'cre', 'CsaV3_1G007340' => 'csa', 'CsaV3_1G040690' => 'csa', 'CsaV3_2G001350' => 'csa', 'CsaV3_2G001800' => 'csa', 'CsaV3_2G001810' => 'csa', 'CsaV3_3G031180' => 'csa', 'CsaV3_3G042770' => 'csa', 'CsaV3_UNG227810' => 'csa', 'CSS0005674' => 'camsi', 'CSS0013235' => 'camsi', 'CSS0015905' => 'camsi', 'CSS0026425' => 'camsi', 'CSS0027368' => 'camsi', 'CSS0039032' => 'camsi', 'CSS0044514' => 'camsi', 'CSS0049065' => 'camsi', 'CSS0049326' => 'camsi', 'CSS0050521' => 'camsi', 'DCAR_000981' => 'dca', 'DCAR_003531' => 'dca', 'DCAR_008243' => 'dca', 'DCAR_012029' => 'dca', 'DCAR_022630' => 'dca', 'DCAR_023565' => 'dca', 'DCAR_023566' => 'dca', 'DCAR_023567' => 'dca', 'DCAR_028280' => 'dca', 'Dinv09198' => 'din', 'Dinv20364' => 'din', 'Dinv33446' => 'din', 'Dinv36720' => 'din', 'Dinv36796' => 'din', 'Dinv37807' => 'din', 'Dinv42259' => 'din', 'Dinv42260' => 'din', 'Dinv42349' => 'din', 'Duzib084G0916' => 'dzi', 'Duzib150G0078' => 'dzi', 'Duzib150G0785' => 'dzi', 'Duzib160G0819' => 'dzi', 'Duzib168G0241' => 'dzi', 'Duzib168G1695' => 'dzi', 'Duzib187G0462' => 'dzi', 'Duzib187G1509' => 'dzi', 'Duzib192G0980' => 'dzi', 'Duzib205G1033' => 'dzi', 'Duzib235G0843' => 'dzi', 'Duzib251G0552' => 'dzi', 'Duzib264G0463' => 'dzi', 'ECA233G5712' => 'eca', 'ECA234G0695' => 'eca', 'ECA234G1756' => 'eca', 'ECA238G2809' => 'eca', 'ECA238G4504' => 'eca', 'EL10Ac3g05894' => 'bvu', 'EL10Ac4g07710' => 'bvu', 'EL10Ac5g12045' => 'bvu', 'EL10Ac8g18365' => 'bvu', 'EL10Ac8g19161' => 'bvu', 'EL10Ac8g19458' => 'bvu', 'Eucgr.C00849' => 'egr', 'Eucgr.C03714' => 'egr', 'Eucgr.E00252' => 'egr', 'Eucgr.H00554' => 'egr', 'Eucgr.I01749' => 'egr', 'Eucgr.K02287' => 'egr', 'FAN02G0095' => 'fan', 'FAN02G1661' => 'fan', 'FAN02G4244' => 'fan', 'FAN04G0297' => 'fan', 'FAN04G2457' => 'fan', 'FAN04G2945' => 'fan', 'FAN05G2196' => 'fan', 'FAN05G2587' => 'fan', 'FAN05G3473' => 'fan', 'FAN08G0681' => 'fan', 'FAN08G0914' => 'fan', 'FAN08G1426' => 'fan', 'FAN09G0360' => 'fan', 'FAN09G4294' => 'fan', 'FAN13G2834' => 'fan', 'FAN13G3031' => 'fan', 'FAN13G3237' => 'fan', 'FAN14G0423' => 'fan', 'FAN14G0595' => 'fan', 'FAN14G4735' => 'fan', 'FAN18G0290' => 'fan', 'FAN18G2472' => 'fan', 'FAN18G3189' => 'fan', 'FAN18G3196' => 'fan', 'FAN19G0699' => 'fan', 'FAN19G2395' => 'fan', 'FAN23G0385' => 'fan', 'FAN23G1803' => 'fan', 'FAN23G2947' => 'fan', 'FAN26G0057' => 'fan', 'FAN26G1476' => 'fan', 'FAN26G1651' => 'fan', 'FAN26G2279' => 'fan', 'FAN28G1541' => 'fan', 'FAN28G2283' => 'fan', 'FvH4_1g06420' => 'fve', 'FvH4_1g08020' => 'fve', 'FvH4_4g27851' => 'fve', 'FvH4_5g02450' => 'fve', 'FvH4_5g02452' => 'fve', 'FvH4_5g02470' => 'fve', 'FvH4_5g17690' => 'fve', 'FvH4_5g22730' => 'fve', 'FvH4_6g37490' => 'fve', 'FvH4_6g37492' => 'fve', 'FvH4_6g51290' => 'fve', 'Glyma.01G015800' => 'gma', 'Glyma.02G186300' => 'gma', 'Glyma.05G004450' => 'gma', 'Glyma.05G005900' => 'gma', 'Glyma.07G003200' => 'gma', 'Glyma.07G105700' => 'gma', 'Glyma.08G223400' => 'gma', 'Glyma.09G066600' => 'gma', 'Glyma.09G172500' => 'gma', 'Glyma.10G107500' => 'gma', 'Glyma.13G106900' => 'gma', 'Glyma.15G172600' => 'gma', 'Glyma.17G052400' => 'gma', 'Glyma.19G006300' => 'gma', 'Gohir.A01G158500' => 'ghi', 'Gohir.A03G000046' => 'ghi', 'Gohir.A05G031900' => 'ghi', 'Gohir.A05G113300' => 'ghi', 'Gohir.A06G074200' => 'ghi', 'Gohir.A06G182250' => 'ghi', 'Gohir.A07G009200' => 'ghi', 'Gohir.A07G013100' => 'ghi', 'Gohir.A11G066300' => 'ghi', 'Gohir.A12G207100' => 'ghi', 'Gohir.A12G270900' => 'ghi', 'Gohir.A13G195100' => 'ghi', 'Gohir.D01G152200' => 'ghi', 'Gohir.D03G174150' => 'ghi', 'Gohir.D05G033400' => 'ghi', 'Gohir.D05G113800' => 'ghi', 'Gohir.D06G073000' => 'ghi', 'Gohir.D06G189100' => 'ghi', 'Gohir.D07G009500' => 'ghi', 'Gohir.D07G012900' => 'ghi', 'Gohir.D11G070500' => 'ghi', 'Gohir.D12G209500' => 'ghi', 'Gohir.D12G271300' => 'ghi', 'Gohir.D12G271400' => 'ghi', 'Gohir.D13G200801' => 'ghi', 'Gorai.001G009700' => 'gra', 'Gorai.001G013600' => 'gra', 'Gorai.002G188500' => 'gra', 'Gorai.003G184000' => 'gra', 'Gorai.007G075600' => 'gra', 'Gorai.008G225100' => 'gra', 'Gorai.008G291700' => 'gra', 'Gorai.008G291800' => 'gra', 'Gorai.009G117800' => 'gra', 'Gorai.010G085300' => 'gra', 'Gorai.010G221800' => 'gra', 'Gorai.013G229600' => 'gra', 'GSVIVG01001713001' => 'vvi', 'GSVIVG01003450001' => 'vvi', 'GSVIVG01008476001' => 'vvi', 'GSVIVG01015155001' => 'vvi', 'GSVIVG01015283001' => 'vvi', 'GSVIVG01016115001' => 'vvi', 'GSVIVG01032414001' => 'vvi', 'GSVIVG01037553001' => 'vvi', 'HanXRQChr03g0087071' => 'han', 'HanXRQChr04g0094171' => 'han', 'HanXRQChr09g0238861' => 'han', 'HanXRQChr10g0311571' => 'han', 'HanXRQChr10g0318871' => 'han', 'HanXRQChr10g0319531' => 'han', 'HanXRQChr12g0354521' => 'han', 'HanXRQChr12g0360031' => 'han', 'HanXRQChr14g0450561' => 'han', 'Haze_08179' => 'cav', 'Haze_14734' => 'cav', 'Haze_18914' => 'cav', 'Haze_25838' => 'cav', 'Haze_25949' => 'cav', 'Haze_27198' => 'cav', 'Haze_27305' => 'cav', 'Hma1.2p1_0471F.1_g159420' => 'hma', 'Hma1.2p1_0663F.1_g198390' => 'hma', 'Hma1.2p1_0672F.1_g200940' => 'hma', 'Hma1.2p1_0785F.1_g217370' => 'hma', 'Hma1.2p1_0785F.1_g217375' => 'hma', 'Hma1.2p1_0785F.1_g217380' => 'hma', 'Hma1.2p1_0785F.1_g217390' => 'hma', 'Hma1.2p1_0999F.1_g246260' => 'hma', 'Hma1.2p1_1104F.1_g257460' => 'hma', 'Hma1.2p1_2161F.1_g315660' => 'hma', 'HPP92_000295' => 'vpl', 'HPP92_003965' => 'vpl', 'HPP92_010483' => 'vpl', 'HPP92_010982' => 'vpl', 'HPP92_015673' => 'vpl', 'HPP92_015844' => 'vpl', 'HPP92_016743' => 'vpl', 'HPP92_018525' => 'vpl', 'HPP92_020906' => 'vpl', 'HPP92_028487' => 'vpl', 'HPP92_028488' => 'vpl', 'Hund08699' => 'sun', 'Hund09089' => 'sun', 'Hund23206' => 'sun', 'Hund25963' => 'sun', 'Lalb_Chr01g0011731' => 'lal', 'Lalb_Chr05g0221511' => 'lal', 'Lalb_Chr06g0175771' => 'lal', 'Lalb_Chr08g0232441' => 'lal', 'Lalb_Chr09g0325581' => 'lal', 'Lalb_Chr12g0199941' => 'lal', 'Lalb_Chr16g0381191' => 'lal', 'Lalb_Chr22g0352491' => 'lal', 'Lalb_Chr25g0278591' => 'lal', 'Lj2g0003584' => 'lja', 'Lj2g0011273' => 'lja', 'Lj2g0017320' => 'lja', 'Lj2g0018660' => 'lja', 'Lj2P234T23' => 'lonja', 'Lj3g0013754' => 'lja', 'Lj4g0011656' => 'lja', 'Lj5C162T9' => 'lonja', 'Lj5C26T4' => 'lonja', 'Lj6g0001338' => 'lja', 'Lj7A667G64' => 'lonja', 'Lj7C599T3' => 'lonja', 'Lj7C680G16' => 'lonja', 'Lj9P540T65' => 'lonja', 'Lsat_1_v5_gn_1_39620' => 'lsa', 'Lsat_1_v5_gn_1_39740' => 'lsa', 'Lsat_1_v5_gn_2_91481' => 'lsa', 'Lsat_1_v5_gn_4_89300' => 'lsa', 'Lsat_1_v5_gn_5_137560' => 'lsa', 'Lsat_1_v5_gn_5_143381' => 'lsa', 'Lsat_1_v5_gn_5_145221' => 'lsa', 'Lsat_1_v5_gn_8_1101' => 'lsa', 'Lsat_1_v5_gn_8_125721' => 'lsa', 'Manes.03G027800' => 'mes', 'Manes.03G037000' => 'mes', 'Manes.03G097700' => 'mes', 'Manes.04G049600' => 'mes', 'Manes.06G002700' => 'mes', 'Manes.10G112223' => 'mes', 'Manes.10G112500' => 'mes', 'Manes.10G112700' => 'mes', 'Manes.12G020400' => 'mes', 'Manes.16G045900' => 'mes', 'Manes.16G099100' => 'mes', 'Manes.17G018200' => 'mes', 'Mapoly0001s0361' => 'mpo', 'Mapoly0015s0047' => 'mpo', 'Mapoly0049s0077' => 'mpo', 'MBI04_g07006_MAGBIO' => 'mbi', 'MBI05_g12575_MAGBIO' => 'mbi', 'MBI14_g39542_MAGBIO' => 'mbi', 'MBI16_g23846_MAGBIO' => 'mbi', 'MBI16_g32016_MAGBIO' => 'mbi', 'MBI19_g19340_MAGBIO' => 'mbi', 'MCO08G068' => 'mco', 'MCO15G009' => 'mco', 'MD00G1010600' => 'mdo', 'MD00G1010700' => 'mdo', 'MD02G1067500' => 'mdo', 'MD02G1084700' => 'mdo', 'MD06G1232600' => 'mdo', 'MD09G1027900' => 'mdo', 'MD09G1157600' => 'mdo', 'MD13G1223400' => 'mdo', 'MD14G1239400' => 'mdo', 'MD15G1199300' => 'mdo', 'MD15G1212100' => 'mdo', 'MD16G1227900' => 'mdo', 'MD16G1228300' => 'mdo', 'MD17G1173100' => 'mdo', 'Medtr1g028230' => 'mtr', 'Medtr2g040510' => 'mtr', 'Medtr4g005830' => 'mtr', 'Medtr4g097810' => 'mtr', 'Medtr4g125800' => 'mtr', 'Medtr5g029670' => 'mtr', 'Medtr6g005210' => 'mtr', 'Medtr6g071280' => 'mtr', 'Medtr6g090470' => 'mtr', 'MELO3C002150.2' => 'cme', 'MELO3C004594.2' => 'cme', 'MELO3C004635.2' => 'cme', 'MELO3C015497.2' => 'cme', 'MELO3C025790.2' => 'cme', 'MELO3C026577.2' => 'cme', 'Migut.D00901' => 'egut', 'Migut.I00011' => 'egut', 'Migut.I00566' => 'egut', 'Migut.I01149' => 'egut', 'Migut.J00561' => 'egut', 'Migut.J00670' => 'egut', 'Migut.J01086' => 'egut', 'Migut.J01294' => 'egut', 'Migut.L01528' => 'egut', 'MSTRG.10898' => 'ama', 'MSTRG.11247' => 'ama', 'MSTRG.11454' => 'ama', 'MSTRG.19545' => 'ama', 'MSTRG.22511' => 'ama', 'MSTRG.26450' => 'ama', 'MSTRG.4532' => 'ama', 'MSTRG.9352' => 'ama', 'MSTRG.9550' => 'ama', 'Nitab4.5_0000430g0170' => 'nta', 'Nitab4.5_0001519g0180' => 'nta', 'Nitab4.5_0001691g0020' => 'nta', 'Nitab4.5_0002079g0030' => 'nta', 'Nitab4.5_0002642g0020' => 'nta', 'Nitab4.5_0002824g0020' => 'nta', 'Nitab4.5_0002885g0020' => 'nta', 'Nitab4.5_0008182g0040' => 'nta', 'Nitab4.5_0008421g0040' => 'nta', 'Nitab4.5_0008535g0050' => 'nta', 'Nitab4.5_0009307g0080' => 'nta', 'Nitab4.5_0010570g0010' => 'nta', 'Nitab4.5_0010879g0010' => 'nta', 'Nn2g12164' => 'nnu', 'Nn4g22654' => 'nnu', 'Nn4g24454' => 'nnu', 'Nn6g35554' => 'nnu', 'Nn8g38765' => 'nnu', 'Nn8g39039' => 'nnu', 'Nn8g40394' => 'nnu', 'Oeu016184.1' => 'oeu', 'Oeu019537.1' => 'oeu', 'Oeu023517.1' => 'oeu', 'Oeu023764.1' => 'oeu', 'Oeu031690.1' => 'oeu', 'Oeu047050.1' => 'oeu', 'Oeu051650.1' => 'oeu', 'Oeu052063.1' => 'oeu', 'Oeu052677.1' => 'oeu', 'Oeu052678.1' => 'oeu', 'Oeu053404.1' => 'oeu', 'Oeu057351.1' => 'oeu', 'Os01g0284300' => 'osa', 'Os01g0510100' => 'osa', 'Os02g0694900' => 'osa', 'Os02g0787300' => 'osa', 'Os03g0225100' => 'osa', 'Os03g0713500' => 'osa', 'Os06g0147800' => 'osa', 'Os06g0191300' => 'osa', 'Os06g0191500' => 'osa', 'Os06g0473200' => 'osa', 'Os11g0226100' => 'osa', 'Peaxi162Scf00015g00944' => 'pax', 'Peaxi162Scf00038g00247' => 'pax', 'Peaxi162Scf00171g00029' => 'pax', 'Peaxi162Scf00171g00106' => 'pax', 'Peaxi162Scf00498g00534' => 'pax', 'PGR042G0005' => 'pgr', 'PGR044G0589' => 'pgr', 'PGR083G1037' => 'pgr', 'PGR102G2850' => 'pgr', 'PGR142G0336' => 'pgr', 'PGR142G0489' => 'pgr', 'PGSC0003DMG400000273' => 'stu', 'PGSC0003DMG400009183' => 'stu', 'PGSC0003DMG400033696' => 'stu', 'PGSC0003DMG402015209' => 'stu', 'PGSC0003DMG403005720' => 'stu', 'Phvul.002G138400' => 'pvu', 'Phvul.003G134100' => 'pvu', 'Phvul.004G010400' => 'pvu', 'Phvul.004G147800' => 'pvu', 'Phvul.004G147900' => 'pvu', 'Phvul.004G174500' => 'pvu', 'Phvul.007G112700' => 'pvu', 'Phvul.009G229800' => 'pvu', 'Phvul.010G163000' => 'pvu', 'Potri.001G138800' => 'ptr', 'Potri.001G345500' => 'ptr', 'Potri.005G057750' => 'ptr', 'Potri.006G146500' => 'ptr', 'Potri.008G009800' => 'ptr', 'Potri.008G183700' => 'ptr', 'Potri.010G049500' => 'ptr', 'Potri.010G249300' => 'ptr', 'Potri.012G043200' => 'ptr', 'Potri.014G047101' => 'ptr', 'Potri.015G030700' => 'ptr', 'Potri.018G050800' => 'ptr', 'Potri.018G068500' => 'ptr', 'Pp3c10_22760' => 'ppa', 'Pp3c16_11030' => 'ppa', 'Pp3c18_10' => 'ppa', 'Pp3c20_22570' => 'ppa', 'Pp3c22_18600' => 'ppa', 'Pp3c24_12310' => 'ppa', 'Pp3c25_9020' => 'ppa', 'Pp3c8_16240' => 'ppa', 'PRCOL_00003388' => 'pco', 'PRCOL_00007073' => 'pco', 'Prupe.1G058300' => 'ppe', 'Prupe.1G082800' => 'ppe', 'Prupe.1G088400' => 'ppe', 'Prupe.1G191900' => 'ppe', 'Prupe.3G168400' => 'ppe', 'Prupe.3G290900' => 'ppe', 'Prupe.5G031000' => 'ppe', 'Prupe.5G236900' => 'ppe', 'Prupe.7G204700' => 'ppe', 'Prupe.7G217900' => 'ppe', 'Psat1g029480' => 'psa', 'Psat1g050720' => 'psa', 'Psat1g054880' => 'psa', 'Psat1g131480' => 'psa', 'Psat2g078720' => 'psa', 'Psat4g016480' => 'psa', 'Psat7g263320' => 'psa', 'PSO063G0385' => 'pso', 'PSO063G4689' => 'pso', 'PSO063G6778' => 'pso', 'PSO063G7636' => 'pso', 'PSO210G5580' => 'pso', 'PSO210G7333' => 'pso', 'PSO782G0433' => 'pso', 'PSO832G1507' => 'pso', 'PSO832G2565' => 'pso', 'PSO832G4400' => 'pso', 'QL02p040820' => 'qlo', 'QL02p061836' => 'qlo', 'QL02p074833' => 'qlo', 'QL04p015899' => 'qlo', 'QL05p083574' => 'qlo', 'QL05p083743' => 'qlo', 'QL10p031534' => 'qlo', 'QL12p004412' => 'qlo', 'RcHm_v2.0_Chr2g0092161' => 'rch', 'RcHm_v2.0_Chr2g0094061' => 'rch', 'RcHm_v2.0_Chr2g0131721' => 'rch', 'RcHm_v2.0_Chr2g0150331' => 'rch', 'RcHm_v2.0_Chr2g0150341' => 'rch', 'RcHm_v2.0_Chr2g0150351' => 'rch', 'RcHm_v2.0_Chr2g0172911' => 'rch', 'RcHm_v2.0_Chr5g0040641' => 'rch', 'RcHm_v2.0_Chr6g0306151' => 'rch', 'RcHm_v2.0_Chr7g0177961' => 'rch', 'RcHm_v2.0_Chr7g0197511' => 'rch', 'RcHm_v2.0_Chr7g0197661' => 'rch', 'RcHm_v2.0_Chr7g0211301' => 'rch', 'Rhsim05G0014500' => 'rsi', 'Rhsim05G0026200' => 'rsi', 'Rhsim08G0051100' => 'rsi', 'Rhsim08G0246500' => 'rsi', 'Rhsim11G0019300' => 'rsi', 'Rhsim11G0126700' => 'rsi', 'Rhsim12G0213900' => 'rsi', 'RhsimUnG0134100' => 'rsi', 'RhsimUnG0143500' => 'rsi', 'Sabra01G0107800' => 'sbr', 'Sabra06G0115700' => 'sbr', 'Sabra08G0005800' => 'sbr', 'Sabra10G0194000' => 'sbr', 'Sabra12G0030400' => 'sbr', 'Sabra15G0025600' => 'sbr', 'Sabra16G0224500' => 'sbr', 'Sabra18G0047400' => 'sbr', 'Sabra18G0060400' => 'sbr', 'SalBow1G4846' => 'sbo', 'SalBow4G2337' => 'sbo', 'SalBow5G3400' => 'sbo', 'SalBow5G3452' => 'sbo', 'SalBow5G5329' => 'sbo', 'SalBow6G2083' => 'sbo', 'SalBow6G2770' => 'sbo', 'SalBow6G4176' => 'sbo', 'SalBow6G5671' => 'sbo', 'SalBow7G4744' => 'sbo', 'Sc03g0007520' => 'sci', 'Sc08g0008070' => 'sci', 'Sc12g0008490' => 'sci', 'Sc13g0005080' => 'sci', 'Sc13g0005090' => 'sci', 'Sc14g0000630' => 'sci', 'Sed0000890' => 'sed', 'Sed0005912' => 'sed', 'Sed0006236' => 'sed', 'Sed0015698' => 'sed', 'Sed0017084' => 'sed', 'Sed0020340' => 'sed', 'Sed0020907' => 'sed', 'Sed0021568' => 'sed', 'Sed0025582' => 'sed', 'Sed0026356' => 'sed', 'SEGI_01801' => 'sgi', 'SEGI_04920' => 'sgi', 'SEGI_07335' => 'sgi', 'SEGI_09439' => 'sgi', 'SEGI_10421' => 'sgi', 'SEGI_10727' => 'sgi', 'SEGI_11605' => 'sgi', 'SEGI_13650' => 'sgi', 'SEGI_20915' => 'sgi', 'SEGI_27357' => 'sgi', 'SEGI_28510' => 'sgi', 'SEGI_29237' => 'sgi', 'SEGI_30158' => 'sgi', 'SEGI_33697' => 'sgi', 'SEGI_33852' => 'sgi', 'SEGI_34806' => 'sgi', 'SEGI_38742' => 'sgi', 'SEGI_40003' => 'sgi', 'SGA_v2.0_scaffold10G05171' => 'sas', 'SGA_v2.0_scaffold192G40635' => 'sas', 'SGA_v2.0_scaffold23G10045' => 'sas', 'SGA_v2.0_scaffold564G52937' => 'sas', 'SGA_v2.0_scaffold62G21563' => 'sas', 'SGA_v2.0_scaffold71G23959' => 'sas', 'SGA_v2.0_scaffold72G24149' => 'sas', 'SGA_v2.0_scaffold90G27934' => 'sas', 'SHI02644' => 'shi', 'SHI07447' => 'shi', 'SHI16715' => 'shi', 'SMO111G0046' => 'smo', 'SMO118G0474' => 'smo', 'SMO329G0075' => 'smo', 'SMO367G0694' => 'smo', 'Solyc03g019850.3' => 'sly', 'Solyc03g097920.1' => 'sly', 'Solyc03g119490.4' => 'sly', 'Solyc03g123800.3' => 'sly', 'Solyc12g009020.2' => 'sly', 'Sopen03g028640' => 'spe', 'Sopen03g029770' => 'spe', 'Sopen03g038340' => 'spe', 'Sopen03g041560' => 'spe', 'Sopen12g003950' => 'spe', 'Sp1g28580' => 'spa', 'Sp1g38310' => 'spa', 'Sp3g19220' => 'spa', 'Sp4g05470' => 'spa', 'Sp5g28670' => 'spa', 'Sp6g18360' => 'spa', 'Sp7g01490' => 'spa', 'Sp7g24080' => 'spa', 'Sp7g27620' => 'spa', 'TAR374G0410' => 'tar', 'TAR374G1175' => 'tar', 'TAR383G0010' => 'tar', 'TAR413G0007' => 'tar', 'TAR622G1284' => 'tar', 'TAR625G0382' => 'tar', 'TAR626G0724' => 'tar', 'TAR626G0866' => 'tar', 'TAR626G1222' => 'tar', 'TAR626G1319' => 'tar', 'TAR626G1448' => 'tar', 'TAR636G0063' => 'tar', 'TAR636G0423' => 'tar', 'TAR636G3272' => 'tar', 'THA.LOC104811725' => 'tha', 'THA.LOC104811755' => 'tha', 'THA.LOC104812179' => 'tha', 'THA.LOC104814636' => 'tha', 'THA.LOC104814637' => 'tha', 'THA.LOC104815163' => 'tha', 'THA.LOC104816902' => 'tha', 'THA.LOC104817739' => 'tha', 'THA.LOC104817763' => 'tha', 'THA.LOC104817928' => 'tha', 'THA.LOC104823949' => 'tha', 'Thecc.02G264700' => 'tca', 'Thecc.02G264800' => 'tca', 'Thecc.03G062500' => 'tca', 'Thecc.03G307300' => 'tca', 'Thecc.04G016400' => 'tca', 'Thecc.06G016800' => 'tca', 'Thecc.09G083200' => 'tca', 'Thecc.09G098600' => 'tca', 'Thhalv10009403m.g' => 'esa', 'Thhalv10011588m.g' => 'esa', 'Thhalv10013956m.g' => 'esa', 'Thhalv10019452m.g' => 'esa', 'Thhalv10021025m.g' => 'esa', 'Thhalv10021961m.g' => 'esa', 'Thhalv10025480m.g' => 'esa', 'Thhalv10025531m.g' => 'esa', 'Thhalv10027723m.g' => 'esa', 'TPR.G14073' => 'tpr', 'TPR.G18098' => 'tpr', 'TPR.G22311' => 'tpr', 'TPR.G33489' => 'tpr', 'TPR.G8089' => 'tpr', 'TPR.G9468' => 'tpr', 'TWI12G0481' => 'twi', 'TWI32G0436' => 'twi', 'TWI34G1899' => 'twi', 'TWI56G0749' => 'twi', 'TWI60G0173' => 'twi', 'TWI60G1697' => 'twi', 'TWI63G1088' => 'twi', 'TWI75G0021' => 'twi', 'TWI75G1279' => 'twi', 'TWI81G0450' => 'twi', 'TWI81G0666' => 'twi', 'unitig_32.g11553' => 'ugi', 'unitig_8.g4687' => 'ugi', 'unitig_8.g4688' => 'ugi', 'unitig_85.g27255' => 'ugi', 'vmacro00306' => 'vma', 'vmacro01688' => 'vma', 'vmacro08712' => 'vma', 'vmacro10844' => 'vma', 'vmacro12035' => 'vma', 'vmacro17164' => 'vma', 'vmacro18277' => 'vma', 'vmacro18705' => 'vma', 'VMungo0331G0480' => 'vmu', 'VMungo0464G0413' => 'vmu', 'VMungo0464G1484' => 'vmu', 'VMungo0464G2104' => 'vmu', 'VMungo1215G0526' => 'vmu', 'VMungo1309G2817' => 'vmu', 'Zm00001eb009250' => 'zma', 'Zm00001eb055060' => 'zma', 'Zm00001eb055090' => 'zma', 'Zm00001eb133330' => 'zma', 'Zm00001eb145170' => 'zma', 'Zm00001eb145180' => 'zma', 'Zm00001eb145190' => 'zma', 'Zm00001eb145200' => 'zma', 'Zm00001eb145220' => 'zma', 'Zm00001eb154530' => 'zma', 'Zm00001eb155050' => 'zma', 'Zm00001eb161740' => 'zma', 'Zm00001eb161750' => 'zma', 'Zm00001eb161760' => 'zma', 'Zm00001eb192730' => 'zma', 'Zm00001eb216150' => 'zma', 'Zm00001eb216200' => 'zma', 'Zm00001eb217030' => 'zma', 'Zm00001eb251330' => 'zma', 'Zm00001eb374270' => 'zma', 'Zm00001eb377050' => 'zma' ) $gf_id = 'HOM05D000606' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000606' ) $data_identifier = 'HOM05D000606' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 7, 'aag' => (int) 7, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 11, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 11, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 11, 'cre' => (int) 3, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 35, 'fve' => (int) 11, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 12, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 13, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 18, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 21 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377050' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1